Monday, January 31, 2011

present problem with swarm

Downloading: http://repo1.maven.org/maven2/Swarm/Swarm/0.9/Swarm-0.9.pom
[INFO] Unable to find resource 'Swarm:Swarm:pom:0.9' in repository central (http://repo1.maven.org/maven2)
[INFO] [compiler:compile {execution: default-compile}]

Wednesday, January 26, 2011

swarm probs

[INFO] [jar:jar {execution: default-jar}]
[INFO] Preparing exec:java
[WARNING] Removing: java from forked lifecycle, to prevent recursive invocation.
[INFO] No goals needed for project - skipping
[INFO] [exec:java {execution: default}]
11:05:36,441 DEBUG JobClient2:134 - 2011-01-26 11:05:36 JavaDaemonTest started
11:05:36,443 DEBUG JobClient2:134 - 2011-01-26 11:05:36 2011-01-26 11:05:36 This is output to StdErr...
11:05:36,906 DEBUG PropertyUtil:33 - L1
11:05:36,914 DEBUG PropertyUtil:35 - L2
11:05:36,914 DEBUG PropertyUtil:39 - L3
11:05:45,709 DEBUG JobManager:742 - Job Submission Thread is running...
11:05:45,807 DEBUG Programs:32 - Getting the list of jobs waiting to be submitted
11:06:21,839 DEBUG JobManager:289 - Submitting 8 jobs
11:06:21,843 DEBUG SwarmUtil:156 - Requesting ticket now
11:06:21,870 DEBUG SwarmUtil:162 - org.apache.axis2.rpc.client.RPCServiceClient@1
11:06:28,330 DEBUG SwarmUtil:166 - Ticket request result: Username: qdong
Email: Default email address
Project: GSA Project
Organization: default organization
Group Job Title: default job title
Group Job Descriptiondefault job description
Expected Number of Jobs130000
Timestamp: Wed Jan 26 11:06:27 CST 2011
TicketID-743724069
Current number of jobs submitted0
11:06:28,357 DEBUG JobManager:258 - ticketID : -743724069
11:06:28,742 DEBUG JobManager:204 - 1017 RepeatMasker
[INFO] ------------------------------------------------------------------------
[ERROR] BUILD ERROR
[INFO] ------------------------------------------------------------------------
[INFO] An exception occured while executing the Java class. org/biojava/bio/BioException

org.biojava.bio.BioException
[INFO] ------------------------------------------------------------------------
[INFO] For more information, run Maven with the -e switch
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 2 minutes 22 seconds
[INFO] Finished at: Wed Jan 26 11:06:28 CST 2011
[INFO] Final Memory: 17M/42M
[INFO] ------------------------------------------------------------------------
11:06:30,704 DEBUG JobClient2:134 - 2011-01-26 11:06:30 ShutdownHook started
11:06:31,204 DEBUG JobClient2:134 - 2011-01-26 11:06:31 shutdown
11:06:31,706 DEBUG JobClient2:134 - 2011-01-26 11:06:31 shutdown
11:06:32,207 DEBUG JobClient2:134 - 2011-01-26 11:06:32 shutdown
11:06:32,707 DEBUG JobClient2:134 - 2011-01-26 11:06:32 ShutdownHook completed