running batch jobs on talon cluster ----> RepeatMasker

#!/bin/bash
DIR=/users/prm0080/RepeatMasker/RepeatMasker/HMP_Bacteria_ContigCombine2
J=0
K=1
for i in $DIR/*
do
files[$J]=$i
let J=$J+$K
done
#BSUB -J "jobArray[1-560]"
#BSUB -n 1
#BSUB -M 2
#BSUB -e mothur.%J.err output error file; %J=job number
# $LSB_JOBINDEX
#Run the application
/users/prm0080/RepeatMasker/RepeatMasker/RepeatMasker ${files[$LSB_JOBINDEX]} -dir $DIR/suresh/