Friday, October 8, 2010

installing diya

* Download url: http://sourceforge.net/projects/diyg/

$ tar zxvf diya-1.0-rc4.tar.gz
$ cd diya-1.0-rc4/

[edit] Prerequisites

* Perl Modules (How to check Perl module)
o Bioperl
o Data::Merger
o Getopt::Long
o FileHandle
o XML::Simple
o File::Basename
* Software
o Perl (>= 5.8)
o MUMmer v3.20
o Glimmer v3.02
o BLAST
o tRNAscan-SE v1.23
o Infernal v0.81
o rfamscan.pl v0.1
* Database
o UniRef50 (refer to Others)
o Protein Clusters (refer to Others)

[edit] Installation

* Steps to install

$ perl Makefile.PL
$ make
$ sudo make install

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