my first job on tera grid ( running repeatmasker)...

Repeatmasker est.fasta


output


est.fasta.cat
est.fasta.log
est.fasta.masked > gives the output file removing the unwanted and redundant data
est.fasta.out > gives where the changes had been made
est.fasta.tbl

est.fasta.out
--------




SW perc perc perc query position in query matching repeat position in repeat
score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID

180 25.0 2.1 0.0 seq1165 373 420 (263) + L2b LINE/L2 3234 3282 (93) 1
180 25.0 2.1 0.0 seq1545 549 596 (16) + L2b LINE/L2 3234 3282 (93) 2
180 25.0 2.1 0.0 seq3921 473 520 (48) + L2b LINE/L2 3234 3282 (93) 3
180 25.0 2.1 0.0 seq5025 181 228 (350) + L2b LINE/L2 3234 3282 (93) 4
180 25.0 2.1 0.0 seq5225 149 196 (531) + L2b LINE/L2 3234 3282 (93) 5
180 25.0 2.1 0.0 seq5514 431 478 (123) + L2b LINE/L2 3234 3282 (93) 6
180 25.0 2.1 0.0 seq5573 359 406 (177) + L2b LINE/L2 3234 3282 (93) 7
180 25.0 2.1 0.0 seq7881 289 336 (296) + L2b LINE/L2 3234 3282 (93) 8
180 25.0 2.1 0.0 seq9083 218 265 (302) + L2b LINE/L2 3234 3282 (93) 9



est.fasta.masked
--------------
>seq1
CAAAGATTAGCTCAACCCCACCCGTGCAGCAGTGGCCAGGAATCCACCAG
TCGCTTTAAATATGCACTACACGCGTTATCGTTGGCGGGGATCCCGGGGG
ATGATCCATTGGCCTTGATACGGGCCACAACCACTGACACGCCCCACAAG
CGAGTTTGGTTCACTGGGGCGAGCTGAAGGTTAGGTCTATCTATTGCGTA
GCCGAAAAAGTCATCACCAGTAACTATGCCGCTCTCCTTGCCCTTTGCCA
TGTGGTAGCTACGTCCTCCTCTATTGCACGTAACCCGGTTCAAAACCACG
AATCGTATCACTTTGCTTCGAAAAACCACTTTGATCCAGATACAAATTAA
ACTGCGATCCGAGCTTACCACCAAATCCGGGAGCATAAGCTGAAAGTGCA
GGAGAGGCAGAGCTGGCGGTGGCCCTTCCACCTCCTTTTATCGTAACACG
ATCGGCACGTCGGGCACTTTCGGGAAGGGCTGCCACACGAAAAGTCTTTT
ATAACTACGAGC
>seq2
CCACGCATTATGTAAAAATTACCGACGTGGAGCTTCGTGCCGCCGGATTG
TAAGAATAGCTCGTTGGAGATTACCTGAGTTGGTTGTTCTTTGTGTGTCA
ATCCATCTCGCCCTGACGACGGGGGCAAACATAAAAGTCCGATAACCCCG
AATTCACCTGGAATCATGGACAACCCGGACATTCCTACTTGGAAATCAGA
TCAGAGTTCGCTCGGATCAGCGACTGTTTGCCCGATAACGCGGGACAGGC
ATGGTTTAAAAAGTTCCGTTTTTTGTGCAAATTTCAAGACAATGCGTCTA
ACCGTAGCCTCGAAGGGCTACTTATCGGCTCGCCGGTTATGGGCGGTGAT
TTAAGTTAACGCGTTAGTTTGTAGAGCAGACACGTCCCTGTACCCATCGA
AGAGTTATCTGTGACTATACCCAATATAGTTCACTTAACTACTTATACGT
CCCCTGACAACATATGATCGAAGATAGAACGTTCGGCTATAGGCTATTAG
AGGCGAGTTGTCTCGAGCACACTTATTAATAAATGTCC
>seq3
TGCGCACGCGAACGCCCCAGCCTAACGTCGGAAATAAGGGGCCTCTAAAT
CCAAGTGCATTGTTCTCCGCTGGTGCGACACCGGACAAGGGTATGATGGA
GATATGACACTTATACTAACGTATGCGTTCCTAACATTCCACCCCAGGCA
ACGCGTACATGGAGGGCCCCGTTGCCTAAGTTGTATCCCCATGGGTGTGC
CAACCAAAAGACCCAGCGCAAGAGGCACTGCACATTCGAGTTATTGAGGA
CGTAGTTAACCGTAGACCCTTTCCATAAATATGCACCTGAGAAGAATCCT
TATGGTCGGCCACGTTCAGTTCCTCATCGTAAACCGGCAAGACCCTATCG
GGCTACAATTCAGATAACTGCGTAAATTGAATTCTAAGTCTGTTAATCCT
CCTGATAACCGGACGTAGTCAGGTCGCTCAATCTATGCGGGTTGAAGGAC
GCTCTACGGGCCCACCCCACGGAGATTGGGTCCTCGGATCGATCTTGGAT
GTCGATACCAAGAAGTCGGATCAAACACGTCTACTACTGCCGGGGTTTTG
CATCCCTAGCGAGCGGGCGGCCGTCGAACGCACTTCGCCCACCTTGATGA
CCCCCCAACCCTTCAGAGGACCCGCCATGGTGAGCACAAGCAACAGAAGT
TAGGGCGTGATTTGAAGAT
>seq4
GGTGACAAGCGGTCTAACGGAGCCTCTACGGGATGGGGATTTTCTGATCA
AACTCTGCCAAGGAGTAGTATAGCACATGAGCTCAGTCGTAGGGAAGCAA
AACAATCACGAGATCCCTCTATATTCTCACCTCCCGAAAGATCTGACCCC
GCCAAGACAGAATATCAGATCCTGAAGATTTATCTCATCCTTAACAGCCA
GGCCGTGGTTCACGTACGGATGACTTTTCGTTAGTGGCGGTATATCGTCC
CTATGTAGGGGAGACGAGACACAAGTATGAGCAGACTTAGCACTTACATC
GGGGACGTTATGGCAAGTGTGCCTGCCCAATGTTCGACTGGCTCCCATGG
GAACTTATAGTTCTTCGGCTACAGACACGGTATATGCCACTCCCTAAAAA
GCTTACAATGTTCAAGCGTAGTCTGTGCAAGGAGAAATGTGATATCATTC
ATGCGAGGCCTCAATTTTTTTTAACAGAGCGGCGGGGCCGCTCGCCGGCC
>seq5
AGCTTTGATGGTAGCTGCGAGCCCATCGCCGGTCTAAGGGACTTGATGGA
GGATCAACTCATCCCATTCGGCCTGGCTTGAGTCCTTCAGTCACTCATTC
TCTTGGCCGCGGATAGGATGCACTTATAAACGACCCAAAAGGGCAGGAGT
TTCAGCCCTAGGAGGGTTTCTGGGTTCACTGGCATTAGCACCGACTCTGG
GCTTAATCCAGGTCCCACGGCTGTGCCGAGAGTCCCTTAGCAGGAGTTGG